BioCore.jl

Description

BioCore.jl provides core definitions that are common to all or many packages in the BioJulia ecosystem.

It also includes a definition of a common IO interface for IO of Bioinformatics formats in BioJulia packages, and includes some helper functions for generating file parsers from state machine automata with Automa.jl

Installation

BioCore is a dependency for other BioJulia packages, but you can install it yourself with:

using Pkg
add("BioCore")
#Pkg.add("BioCore") for julia prior to v0.7

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

Testing

BioCore.jl is tested against Julia 0.7 and 1.0.x on Linux, OS X, and Windows.

PackageEvaluator	Latest Build Status

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the CONTRIBUTING file provided with every BioJulia package package for detailed contributor and maintainer guidelines.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

Backers & Sponsors

Thank you to all our backers and sponsors!

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Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on Discord, or you can try the Bio category of the Julia discourse site.