This is the first tagged release in a while, and importantly, the first release since releasing the preprint. It has a lot of breaking changes when compared to v0.6 and also to the pandora_paper_tag1 tag.

Added

• discover subcommand for de novo variant discovery [#234]
• many more tests

Changed

• FASTA/Q files are now parsed with klib [#223]
• command-line interface is now overhauled with many breaking changes [#224]
• global genotyping has been made default [#220]
• Various improvements to VCF-related functions

Fixed

• k-mer coverage underflow bug in LocalPRG [#183]